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PDB 8QXD

61 chains80 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 21Small nuclear ribonucleoprotein Sm D1view chain
1 domain
Chain 22Small nuclear ribonucleoprotein Sm D2view chain
1 domain
Chain 23Small nuclear ribonucleoprotein Sm D3view chain
1 domain
Chain 2AU2 small nuclear ribonucleoprotein A'view chain
1 domain
Chain 2bSmall nuclear ribonucleoprotein-associated proteins B and B'view chain
1 domain
Chain 2BU2 small nuclear ribonucleoprotein B''view chain
1 domain
Chain 2eSmall nuclear ribonucleoprotein Eview chain
1 domain
Chain 2fSmall nuclear ribonucleoprotein Fview chain
1 domain
Chain 2gSmall nuclear ribonucleoprotein Gview chain
1 domain
Chain 41Small nuclear ribonucleoprotein Sm D1view chain
1 domain
Chain 42Small nuclear ribonucleoprotein Sm D2view chain
1 domain
Chain 43Small nuclear ribonucleoprotein Sm D3view chain
1 domain
Chain 4bSmall nuclear ribonucleoprotein-associated proteins B and B'view chain
1 domain
Chain 4eSmall nuclear ribonucleoprotein Eview chain
1 domain
Chain 4fSmall nuclear ribonucleoprotein Fview chain
1 domain
Chain 4gSmall nuclear ribonucleoprotein Gview chain
1 domain
Chain 51Small nuclear ribonucleoprotein Sm D1view chain
1 domain
Chain 52Small nuclear ribonucleoprotein Sm D2view chain
1 domain
Chain 53Small nuclear ribonucleoprotein Sm D3view chain
1 domain
Chain 5bSmall nuclear ribonucleoprotein-associated proteins B and B'view chain
1 domain
Chain 5eSmall nuclear ribonucleoprotein Eview chain
1 domain
Chain 5fSmall nuclear ribonucleoprotein Fview chain
1 domain
Chain 5gSmall nuclear ribonucleoprotein Gview chain
1 domain
Chain 62U6 snRNA-associated Sm-like protein LSm2view chain
1 domain
Chain 63U6 snRNA-associated Sm-like protein LSm3view chain
1 domain
Chain 64U6 snRNA-associated Sm-like protein LSm4view chain
1 domain
Chain 65U6 snRNA-associated Sm-like protein LSm5view chain
1 domain
Chain 66U6 snRNA-associated Sm-like protein LSm6view chain
1 domain
Chain 67U6 snRNA-associated Sm-like protein LSm7view chain
1 domain
Chain 68U6 snRNA-associated Sm-like protein LSm8view chain
1 domain
Chain 7Splicing factor 3A subunit 1view chain
1 domain
Chain 8Splicing factor 3A subunit 2view chain
2 domains
Chain 9Splicing factor 3A subunit 3view chain
1 domain
Chain B1Splicing factor 3B subunit 1view chain
1 domain
Chain B4Splicing factor 3B subunit 4view chain
1 domain
Chain B5Splicing factor 3B subunit 5view chain
1 domain
Chain B6Splicing factor 3B subunit 6view chain
1 domain
Chain BPPHD finger-like domain-containing protein 5Aview chain
1 domain
Chain C116 kDa U5 small nuclear ribonucleoprotein componentview chain
5 domains
Chain DThioredoxin-like protein 4Aview chain
1 domain
Chain EU5 small nuclear ribonucleoprotein 40 kDa proteinview chain
1 domain
Chain FU4/U6 small nuclear ribonucleoprotein Prp4view chain
1 domain
Chain GProbable ATP-dependent RNA helicase DDX23view chain
2 domains
Chain JU4/U6 small nuclear ribonucleoprotein Prp3view chain
1 domain
Chain KSerine/threonine-protein kinase PRP4 homologview chain
1 domain
Chain LU4/U6 small nuclear ribonucleoprotein Prp31view chain
2 domains
Chain MNHP2-like protein 1, N-terminally processedview chain
1 domain
Chain NPre-mRNA-processing factor 6view chain
1 domain
Chain RRNA-binding protein 42view chain
1 domain
Chain UUbiquitin carboxyl-terminal hydrolase 39view chain
2 domains

All Domains (80)

#ChainDomain IDRangeFamilyClassification
121e8qxd21121:2-81LSM4 → 4.1 → 4.1.1
222e8qxd22122:26-73,22:93-118LSM4 → 4.1 → 4.1.1
323e8qxd23123:4-75LSM4 → 4.1 → 4.1.1
42Ae8qxd2A12A:2-163LRR_9207 → 207.1 → 207.1.1
52be8qxd2b12b:7-95LSM4 → 4.1 → 4.1.1
62Be8qxd2B12B:3-96RRM_1304 → 304.9 → 304.9.1
72ee8qxd2e12e:18-92LSM4 → 4.1 → 4.1.1
82fe8qxd2f12f:7-81LSM4 → 4.1 → 4.1.1
92ge8qxd2g12g:4-76LSM4 → 4.1 → 4.1.1
1041e8qxd41141:2-81LSM4 → 4.1 → 4.1.1
1142e8qxd42142:26-73,42:93-118LSM4 → 4.1 → 4.1.1
1243e8qxd43143:4-75LSM4 → 4.1 → 4.1.1
134be8qxd4b014b:8-89LSM4 → 4.1 → 4.1.1
144ee8qxd4e14e:18-92LSM4 → 4.1 → 4.1.1
154fe8qxd4f14f:7-81LSM4 → 4.1 → 4.1.1
164ge8qxd4g014g:3-76LSM4 → 4.1 → 4.1.1
1751e8qxd51151:2-81LSM4 → 4.1 → 4.1.1
1852e8qxd52152:26-73,52:93-118LSM4 → 4.1 → 4.1.1
1953e8qxd53153:4-75LSM4 → 4.1 → 4.1.1
205be8qxd5b015b:4-89LSM4 → 4.1 → 4.1.1
215ee8qxd5e15e:18-92LSM4 → 4.1 → 4.1.1
225fe8qxd5f15f:7-81LSM4 → 4.1 → 4.1.1
235ge8qxd5g15g:1-74LSM4 → 4.1 → 4.1.1
2462e8qxd62162:1-90LSM4 → 4.1 → 4.1.1
2563e8qxd63163:16-97LSM4 → 4.1 → 4.1.1
2664e8qxd64164:2-80LSM4 → 4.1 → 4.1.1
2765e8qxd65165:10-85LSM4 → 4.1 → 4.1.1
2866e8qxd66166:7-76LSM4 → 4.1 → 4.1.1
2967e8qxd67167:11-87LSM4 → 4.1 → 4.1.1
3068e8qxd68168:7-67LSM4 → 4.1 → 4.1.1
317e8qxd717:160-285Surp,PRP21_like_P574 → 574.1 → 574.1.1
328e8qxd818:18-35,8:40-86zf-met386 → 386.1 → 386.1.1
338e8qxd828:87-91,8:114-223SF3A2319 → 319.2 → 319.2.1
349e8qxd919:2-353386.1.1.0386 → 386.1 → 386.1.1
35Ae8qxdA1A:26-810PRO8NT,PROCN1038 → 1038.1 → 1038.1.1
36Ae8qxdA2A:811-1182RRM_4304 → 304.48 → 304.48.1
37Ae8qxdA3A:1183-1502U6-snRNA_bdg,U5_2-snRNA_bdg4967 → 4967.1 → 4967.1.1
38Ae8qxdA4A:1755-2006PRP8_domainIV2484 → 2484.1 → 2484.1.1
39Ae8qxdA5A:1503-1754U6-snRNA_bdg2008 → 2008.1 → 2008.1.1
40Ae8qxdA6A:2067-2314JAB,PROCT2492 → 2492.1 → 2492.1.1
41Be8qxdB1B:1312-1520DEAD2004 → 2004.1 → 2004.1.1
42Be8qxdB2B:683-886Helicase_C2004 → 2004.1 → 2004.1.1
43Be8qxdB3B:1825-1957Sec634156 → 4156.1 → 4156.1.1
44Be8qxdB4B:433-682DEAD2004 → 2004.1 → 2004.1.1
45Be8qxdB5B:2016-2125Sec6311 → 11.1 → 11.1.1
46Be8qxdB6B:1723-1824SNRNP200_wHTH101 → 101.1 → 101.1.2
47Be8qxdB7B:887-993SNRNP200_wHTH101 → 101.1 → 101.1.2
48Be8qxdB8B:994-1125Sec634156 → 4156.1 → 4156.1.1
49Be8qxdB9B:1958-2015102.5.1.0102 → 102.5 → 102.5.1
50Be8qxdB10B:1521-1722Helicase_C2004 → 2004.1 → 2004.1.1
51Be8qxdB11B:1181-1311Sec6311 → 11.1 → 11.1.1
52Be8qxdB12B:1126-1180102.5.1.0102 → 102.5 → 102.5.1
53B1e8qxdB1_1B1:463-485,B1:487-1304PPP2R1A-like_HEAT109 → 109.4 → 109.4.1
54B3e8qxdB31B3:404-441,B3:773-807,B3:848-1132CPSF_A5 → 5.1 → 5.1.4
55B3e8qxdB32B3:1-403MMS1_N5 → 5.1 → 5.1.4
56B3e8qxdB33B3:1133-1217CPSF_A101 → 101.1 → 101.1.1
57B3e8qxdB34B3:442-772Beta-prop_RSE1_2nd5 → 5.1 → 5.1.4
58B4e8qxdB41B4:12-89RRM_1304 → 304.9 → 304.9.1
59B5e8qxdB51B5:15-80SF3b101106 → 1106.1 → 1106.1.1
60B6e8qxdB61B6:12-125RRM_1304 → 304.9 → 304.9.1
61BPe8qxdBP1BP:7-91PHF5377 → 377.1 → 377.1.4
62Ce8qxdC1C:829-957EFG_C304 → 304.24 → 304.24.1
63Ce8qxdC2C:581-659EFG_III304 → 304.24 → 304.24.1
64Ce8qxdC3C:660-828EFG_IV212 → 212.1 → 212.1.1
65Ce8qxdC4C:114-439GTP_EFTU2004 → 2004.1 → 2004.1.1
66Ce8qxdC5C:440-580GTP_EFTU_D21 → 1.1 → 1.1.7
67De8qxdD1D:2-138DIM12485 → 2485.1 → 2485.1.1
68Ee8qxdE1E:62-355WD40, Beta-prop_NOL10_N5 → 5.1 → 5.1.4
69Fe8qxdF1F:164-522WD405 → 5.1 → 5.1.4
70Ge8qxdG1G:352-630DEAD2004 → 2004.1 → 2004.1.1
71Ge8qxdG2G:639-806Helicase_C2004 → 2004.1 → 2004.1.1
72Je8qxdJ1J:539-673Prp3_C304 → 304.110 → 304.110.1
73Ke8qxdK1K:676-1005Pkinase206 → 206.1 → 206.1.1
74Le8qxdL1L:85-216Nop606 → 606.1 → 606.1.1
75Le8qxdL2L:217-333Nop102 → 102.1 → 102.1.4
76Me8qxdM1M:4-128Ribosomal_L7Ae301 → 301.1 → 301.1.1
77Ne8qxdN1N:292-937TPR_14, TPR_16, TPR_19, PRP6_TPR109 → 109.4 → 109.4.1
78Re8qxdR1R:369-474RRM_1304 → 304.9 → 304.9.1
79Ue8qxdU1U:223-556UCH219 → 219.1 → 219.1.1
80Ue8qxdU2U:105-190zf-UBP376 → 376.1 → 376.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors