ECODEvolutionary Classification of Protein Domains

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PDB 8SAW

ELECTRON MICROSCOPY12 chains18 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ACH848.3.D0949.10.17chim.6R.SOSIP.664 gp120Aview chain

3 domains

e8sawA1(A:32-119,A:203-255,A:474-505)e8sawA2(A:120-202)e8sawA3(A:256-473)

Chain BCH848.3.D0949.10.17chim.6R.SOSIP.664 gp41view chain

1 domain

e8sawB1(B:521-664)

Chain CDH270.UCA. G57R heavy chainview chain

1 domain

e8sawC1(C:1-126)

Chain DDH270.UCA. G57R light chainview chain

1 domain

e8sawD1(D:1-110)

Chain ECH848.3.D0949.10.17chim.6R.SOSIP.664 gp120Aview chain

3 domains

e8sawE1(E:120-202)e8sawE2(E:256-473)e8sawE3(E:32-119,E:203-255,E:474-505)

Chain FCH848.3.D0949.10.17chim.6R.SOSIP.664 gp41view chain

1 domain

e8sawF1(F:521-664)

Chain HDH270.UCA. G57R heavy chainview chain

1 domain

e8sawH1(H:1-126)

Chain IDH270.UCA. G57R light chainview chain

1 domain

e8sawI1(I:32-149)

Chain KCH848.3.D0949.10.17chim.6R.SOSIP.664 gp120Aview chain

3 domains

e8sawK1(K:217-430)e8sawK2(K:1-88,K:164-216,K:431-462)e8sawK3(K:89-163)

Chain LCH848.3.D0949.10.17chim.6R.SOSIP.664 gp41view chain

1 domain

e8sawL1(L:10-132)

Chain MDH270.UCA. G57R heavy chainview chain

1 domain

e8sawM1(M:1-126)

Chain NDH270.UCA. G57R light chainview chain

1 domain

e8sawN1(N:1-110)

All Domains (18)

#	Chain	Domain ID	Range	Family	Classification
1	A	e8sawA1	A:32-119,A:203-255,A:474-505	GP120	1061 → 1061.1 → 1061.1.1
2	A	e8sawA2	A:120-202	GP120	6173 → 6173.1 → 6173.1.1
3	A	e8sawA3	A:256-473	GP120	259 → 259.1 → 259.1.1
4	B	e8sawB1	B:521-664	GP41	3567 → 3567.1 → 3567.1.1
5	C	e8sawC1	C:1-126	V-set	11 → 11.1 → 11.1.1
6	D	e8sawD1	D:1-110	V-set	11 → 11.1 → 11.1.1
7	E	e8sawE1	E:120-202	GP120	6173 → 6173.1 → 6173.1.1
8	E	e8sawE2	E:256-473	GP120	259 → 259.1 → 259.1.1
9	E	e8sawE3	E:32-119,E:203-255,E:474-505	GP120	1061 → 1061.1 → 1061.1.1
10	F	e8sawF1	F:521-664	GP41	3567 → 3567.1 → 3567.1.1
11	H	e8sawH1	H:1-126	V-set	11 → 11.1 → 11.1.1
12	I	e8sawI1	I:32-149	V-set	11 → 11.1 → 11.1.1
13	K	e8sawK1	K:217-430	GP120	259 → 259.1 → 259.1.1
14	K	e8sawK2	K:1-88,K:164-216,K:431-462	GP120	1061 → 1061.1 → 1061.1.1
15	K	e8sawK3	K:89-163	GP120	6173 → 6173.1 → 6173.1.1
16	L	e8sawL1	L:10-132	GP41	3567 → 3567.1 → 3567.1.1
17	M	e8sawM1	M:1-126	V-set	11 → 11.1 → 11.1.1
18	N	e8sawN1	N:1-110	V-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors