ECODEvolutionary Classification of Protein Domains

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PDB 8SMY

ELECTRON MICROSCOPY12 chains10 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AHistone H3.1view chain

1 domain

e8smyA1(A:42-140)

Chain BHistone H4view chain

1 domain

e8smyB1(B:26-107)

Chain CHistone H2A type 1-B/Eview chain

1 domain

e8smyC1(C:1-119)

Chain DHistone H2B type 1-Jview chain

1 domain

e8smyD1(D:38-128)

Chain EHistone H3.1view chain

1 domain

e8smyE1(E:42-140)

Chain FHistone H4view chain

1 domain

e8smyF1(F:26-107)

Chain GHistone H2A type 1-B/Eview chain

1 domain

e8smyG1(G:1-119)

Chain HHistone H2B type 1-Jview chain

1 domain

e8smyH1(H:38-128)

Chain KE3 ubiquitin-protein ligase RNF168view chain

1 domain

e8smyK1(K:1-103)

Chain LUbiquitin-conjugating enzyme E2 D3view chain

1 domain

e8smyL1(L:1-151)

All Domains (10)

#	Chain	Domain ID	Range	Family	Classification
1	A	e8smyA1	A:42-140	Histone	148 → 148.1 → 148.1.1
2	B	e8smyB1	B:26-107	CENP-T_C	148 → 148.1 → 148.1.1
3	C	e8smyC1	C:1-119	Histone,Histone_H2A_C	148 → 148.1 → 148.1.1
4	D	e8smyD1	D:38-128	Histone	148 → 148.1 → 148.1.1
5	E	e8smyE1	E:42-140	Histone	148 → 148.1 → 148.1.1
6	F	e8smyF1	F:26-107	CENP-T_C	148 → 148.1 → 148.1.1
7	G	e8smyG1	G:1-119	Histone,Histone_H2A_C	148 → 148.1 → 148.1.1
8	H	e8smyH1	H:38-128	Histone	148 → 148.1 → 148.1.1
9	K	e8smyK1	K:1-103	Prok-RING_4	376 → 376.1 → 376.1.1
10	L	e8smyL1	L:1-151	UQ_con	216 → 216.1 → 216.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors