ECODEvolutionary Classification of Protein Domains

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PDB 8UPF

ELECTRON MICROSCOPY12 chains10 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AHistone H3.1view chain

1 domain

e8upfA1(A:42-140)

Chain BHistone H4view chain

1 domain

e8upfB1(B:26-107)

Chain CHistone H2A type 1-B/Eview chain

1 domain

e8upfC1(C:1-109)

Chain DHistone H2B type 1-Jview chain

1 domain

e8upfD01(D:33-123)

Chain EHistone H3.1view chain

1 domain

e8upfE1(E:42-140)

Chain FHistone H4view chain

1 domain

e8upfF1(F:26-107)

Chain GHistone H2A type 1-B/Eview chain

1 domain

e8upfG1(G:1-109)

Chain HHistone H2B type 1-Jview chain

1 domain

e8upfH1(H:29-119)

Chain KE3 ubiquitin-protein ligase RNF168view chain

1 domain

e8upfK01(K:-1-99)

Chain LUbiquitin-conjugating enzyme E2 D3view chain

1 domain

e8upfL01(L:-2-147)

All Domains (10)

#	Chain	Domain ID	Range	Family	Classification
1	A	e8upfA1	A:42-140	Histone	148 → 148.1 → 148.1.1
2	B	e8upfB1	B:26-107	CENP-T_C	148 → 148.1 → 148.1.1
3	C	e8upfC1	C:1-109	Histone,Histone_H2A_C	148 → 148.1 → 148.1.1
4	D	e8upfD01	D:33-123	Histone	148 → 148.1 → 148.1.1
5	E	e8upfE1	E:42-140	Histone	148 → 148.1 → 148.1.1
6	F	e8upfF1	F:26-107	CENP-T_C	148 → 148.1 → 148.1.1
7	G	e8upfG1	G:1-109	Histone,Histone_H2A_C	148 → 148.1 → 148.1.1
8	H	e8upfH1	H:29-119	Histone	148 → 148.1 → 148.1.1
9	K	e8upfK01	K:-1-99	Prok-RING_4	376 → 376.1 → 376.1.1
10	L	e8upfL01	L:-2-147	UQ_con	216 → 216.1 → 216.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors