PDB 8XY6
9 chains21 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
9 domains
e8xy6A1(A:1-311,A:393-395,A:437-439,A:539-541,A:561-561,A:576-576,A:581-586,A:612-612,A:711-712,A:725-725,A:768-768,A:891-895,A:972-974,A:984-986,A:1098-1101)e8xy6A2(A:312-349,A:410-436,A:440-496)e8xy6A3(A:350-392,A:396-409)e8xy6A4(A:497-538,A:542-560,A:562-575,A:577-580,A:587-611,A:613-650)e8xy6A5(A:651-710,A:713-724,A:726-767,A:769-859)e8xy6A6(A:860-890,A:896-971,A:975-983,A:987-1037)e8xy6A7(A:1038-1079,A:1140-1141,A:1157-1158,A:1231-1233,A:1255-1257,A:1289-1437)e8xy6A8(A:1080-1097,A:1102-1111,A:1228-1230,A:1234-1254,A:1258-1288)e8xy6A9(A:1112-1139,A:1142-1156,A:1159-1227)
7 domains
e8xy6B1(B:1-148,B:150-219,B:293-297,B:306-308,B:314-315,B:322-323,B:336-339,B:345-346,B:356-359,B:425-425,B:438-498,B:500-582,B:602-603)e8xy6B2(B:149-149,B:220-292,B:298-305,B:309-313,B:316-321,B:324-335,B:340-344,B:347-355,B:360-424,B:426-437,B:499-499)e8xy6B3(B:583-601,B:604-669,B:695-701)e8xy6B4(B:702-847)e8xy6B5(B:848-879,B:881-885,B:999-1122)e8xy6B6(B:880-880,B:886-998)e8xy6B7(B:1123-1203)
3 domains
2 domains
All Domains (21)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e8xy6A1 | A:1-311,A:393-395,A:437-439,A:539-541,A:561-561,A:576-576,A:581-586,A:612-612,A:711-712,A:725-725,A:768-768,A:891-895,A:972-974,A:984-986,A:1098-1101 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 2 | A | e8xy6A2 | A:312-349,A:410-436,A:440-496 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 3 | A | e8xy6A3 | A:350-392,A:396-409 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 4 | A | e8xy6A4 | A:497-538,A:542-560,A:562-575,A:577-580,A:587-611,A:613-650 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 5 | A | e8xy6A5 | A:651-710,A:713-724,A:726-767,A:769-859 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 6 | A | e8xy6A6 | A:860-890,A:896-971,A:975-983,A:987-1037 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 7 | A | e8xy6A7 | A:1038-1079,A:1140-1141,A:1157-1158,A:1231-1233,A:1255-1257,A:1289-1437 | RNA_pol_Rpb1_5 | 275 → 275.1 → 275.1.1 |
| 8 | A | e8xy6A8 | A:1080-1097,A:1102-1111,A:1228-1230,A:1234-1254,A:1258-1288 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 9 | A | e8xy6A9 | A:1112-1139,A:1142-1156,A:1159-1227 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 10 | B | e8xy6B1 | B:1-148,B:150-219,B:293-297,B:306-308,B:314-315,B:322-323,B:336-339,B:345-346,B:356-359,B:425-425,B:438-498,B:500-582,B:602-603 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 11 | B | e8xy6B2 | B:149-149,B:220-292,B:298-305,B:309-313,B:316-321,B:324-335,B:340-344,B:347-355,B:360-424,B:426-437,B:499-499 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 12 | B | e8xy6B3 | B:583-601,B:604-669,B:695-701 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 13 | B | e8xy6B4 | B:702-847 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 14 | B | e8xy6B5 | B:848-879,B:881-885,B:999-1122 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 15 | B | e8xy6B6 | B:880-880,B:886-998 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 16 | B | e8xy6B7 | B:1123-1203 | RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 17 | C | e8xy6C1 | C:41-67,C:72-75,C:180-185 | 305.1.1.0 | 305 → 305.1 → 305.1.1 |
| 18 | C | e8xy6C2 | C:68-71,C:76-179 | 240.2.1.0 | 240 → 240.2 → 240.2.1 |
| 19 | C | e8xy6C3 | C:297-357 | 305.1.1.0 | 305 → 305.1 → 305.1.1 |
| 20 | D | e8xy6D1 | D:114-134 | 2008.3.1.0 | 2008 → 2008.3 → 2008.3.1 |
| 21 | D | e8xy6D2 | D:135-205 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors