ECODEvolutionary Classification of Protein Domains

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PDB 8Y7E

ELECTRON MICROSCOPY17 chains16 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 1Splicing factor 3B subunit 1view chain

1 domain

e8y7e11(1:463-485,1:487-1304)

Chain 3Splicing factor 3B subunit 3view chain

4 domains

e8y7e31(3:404-441,3:773-807,3:848-1132)e8y7e32(3:1-403)e8y7e33(3:1133-1217)e8y7e34(3:442-772)

Chain 4Splicing factor 3B subunit 4view chain

1 domain

e8y7e41(4:12-89)

Chain 5Splicing factor 3B subunit 6view chain

1 domain

e8y7e51(5:12-125)

Chain 6PHD finger-like domain-containing protein 5Aview chain

1 domain

e8y7e61(6:7-91)

Chain 7Splicing factor 3B subunit 5view chain

1 domain

e8y7e71(7:15-80)

Chain hSmall nuclear ribonucleoprotein Sm D3view chain

1 domain

e8y7eh1(h:4-75)

Chain iSmall nuclear ribonucleoprotein-associated proteins B and B'view chain

1 domain

e8y7ei1(i:7-95)

Chain jSmall nuclear ribonucleoprotein Sm D1view chain

1 domain

e8y7ej1(j:2-81)

Chain kSmall nuclear ribonucleoprotein Sm D2view chain

1 domain

e8y7ek1(k:26-73,k:93-118)

Chain lSmall nuclear ribonucleoprotein Eview chain

1 domain

e8y7el1(l:18-92)

Chain mSmall nuclear ribonucleoprotein Fview chain

1 domain

e8y7em1(m:7-81)

Chain nSmall nuclear ribonucleoprotein Gview chain

1 domain

e8y7en1(n:4-76)

All Domains (16)

#	Chain	Domain ID	Range	Family	Classification
1	1	e8y7e11	1:463-485,1:487-1304	PPP2R1A-like_HEAT	109 → 109.4 → 109.4.1
2	3	e8y7e31	3:404-441,3:773-807,3:848-1132	CPSF_A	5 → 5.1 → 5.1.4
3	3	e8y7e32	3:1-403	MMS1_N	5 → 5.1 → 5.1.4
4	3	e8y7e33	3:1133-1217	CPSF_A	101 → 101.1 → 101.1.1
5	3	e8y7e34	3:442-772	Beta-prop_RSE1_2nd	5 → 5.1 → 5.1.4
6	4	e8y7e41	4:12-89	RRM_1	304 → 304.9 → 304.9.1
7	5	e8y7e51	5:12-125	RRM_1	304 → 304.9 → 304.9.1
8	6	e8y7e61	6:7-91	PHF5	377 → 377.1 → 377.1.4
9	7	e8y7e71	7:15-80	SF3b10	1106 → 1106.1 → 1106.1.1
10	h	e8y7eh1	h:4-75	LSM	4 → 4.1 → 4.1.1
11	i	e8y7ei1	i:7-95	LSM	4 → 4.1 → 4.1.1
12	j	e8y7ej1	j:2-81	LSM	4 → 4.1 → 4.1.1
13	k	e8y7ek1	k:26-73,k:93-118	LSM	4 → 4.1 → 4.1.1
14	l	e8y7el1	l:18-92	LSM	4 → 4.1 → 4.1.1
15	m	e8y7em1	m:7-81	LSM	4 → 4.1 → 4.1.1
16	n	e8y7en1	n:4-76	LSM	4 → 4.1 → 4.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors