ECODEvolutionary Classification of Protein Domains

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PDB 8YDD

5 chains5 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AWD repeat-containing protein 5view chain

1 domain

e8yddA1(A:10-313)

Chain BWD repeat-containing protein 5view chain

1 domain

e8yddB1(B:10-313)

Chain CWD repeat-containing protein 5view chain

1 domain

e8yddC1(C:10-313)

Chain DHomeobox protein NANOGview chain

1 domain

e8yddD01(D:95-155)

Chain EHomeobox protein NANOGview chain

1 domain

e8yddE1(E:1-61)

All Domains (5)

#	Chain	Domain ID	Range	Family	Classification
1	A	e8yddA1	A:10-313	WD40, eIF2A, Beta-prop_WDR5	5 → 5.1 → 5.1.4
2	B	e8yddB1	B:10-313	WD40, eIF2A, Beta-prop_WDR5	5 → 5.1 → 5.1.4
3	C	e8yddC1	C:10-313	WD40, eIF2A, Beta-prop_WDR5	5 → 5.1 → 5.1.4
4	D	e8yddD01	D:95-155	Homeodomain	101 → 101.1 → 101.1.1
5	E	e8yddE1	E:1-61	Homeodomain	101 → 101.1 → 101.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors