ECODEvolutionary Classification of Protein Domains

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PDB 8YGD

34 chains35 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 0Antenna pigment protein beta chainview chain

1 domain

e8ygd001(0:1-49)

Chain 1Antenna pigment protein alpha chainview chain

1 domain

e8ygd101(1:1-62)

Chain 2Antenna pigment protein beta chainview chain

1 domain

e8ygd21(2:1-49)

Chain 3Antenna pigment protein alpha chainview chain

1 domain

e8ygd31(3:1-62)

Chain 7Antenna pigment protein alpha chainview chain

1 domain

e8ygd71(7:1-62)

Chain 8Antenna pigment protein beta chainview chain

1 domain

e8ygd81(8:1-49)

Chain 9Antenna pigment protein alpha chainview chain

1 domain

e8ygd91(9:1-62)

Chain aAntenna pigment protein alpha chainview chain

1 domain

e8ygda1(a:1-62)

Chain AAntenna pigment protein alpha chainview chain

1 domain

e8ygdA1(A:1-62)

Chain bAntenna pigment protein beta chainview chain

1 domain

e8ygdb1(b:1-49)

Chain BAntenna pigment protein beta chainview chain

1 domain

e8ygdB1(B:1-49)

Chain CAntenna pigment protein beta chainview chain

1 domain

e8ygdC1(C:1-49)

Chain DAntenna pigment protein alpha chainview chain

1 domain

e8ygdD1(D:1-62)

Chain EAntenna pigment protein beta chainview chain

1 domain

e8ygdE1(E:1-49)

Chain FAntenna pigment protein alpha chainview chain

1 domain

e8ygdF1(F:1-62)

Chain GAntenna pigment protein beta chainview chain

1 domain

e8ygdG1(G:1-49)

Chain HPhotosynthetic reaction center subunit Hview chain

2 domains

e8ygdH01(H:1-35)e8ygdH02(H:36-253)

Chain IAntenna pigment protein alpha chainview chain

1 domain

e8ygdI1(I:1-62)

Chain JAntenna pigment protein beta chainview chain

1 domain

e8ygdJ1(J:1-49)

Chain KAntenna pigment protein alpha chainview chain

1 domain

e8ygdK1(K:1-62)

Chain LReaction center protein L chainview chain

1 domain

e8ygdL01(L:1-282)

Chain MReaction center protein M chainview chain

1 domain

e8ygdM01(M:1-303)

Chain NAntenna pigment protein beta chainview chain

1 domain

e8ygdN1(N:1-49)

Chain OAntenna pigment protein alpha chainview chain

1 domain

e8ygdO1(O:1-62)

Chain PAntenna pigment protein beta chainview chain

1 domain

e8ygdP1(P:1-49)

Chain QAntenna pigment protein alpha chainview chain

1 domain

e8ygdQ1(Q:1-62)

Chain RAntenna pigment protein beta chainview chain

1 domain

e8ygdR1(R:1-49)

Chain SAntenna pigment protein alpha chainview chain

1 domain

e8ygdS1(S:1-62)

Chain TAntenna pigment protein beta chainview chain

1 domain

e8ygdT1(T:1-49)

Chain UAntenna pigment protein alpha chainview chain

1 domain

e8ygdU1(U:1-62)

Chain VAntenna pigment protein beta chainview chain

1 domain

e8ygdV1(V:1-49)

Chain WAntenna pigment protein alpha chainview chain

1 domain

e8ygdW1(W:1-62)

Chain X1-deoxy-D-xylulose-5-phosphate synthaseview chain

1 domain

e8ygdX01(X:1-73)

Chain ZAntenna pigment protein beta chainview chain

1 domain

e8ygdZ1(Z:1-49)

All Domains (35)

#	Chain	Domain ID	Range	Family	Classification
1	0	e8ygd001	0:1-49	LHC	5074 → 5074.1 → 5074.1.1
2	1	e8ygd101	1:1-62	LHC	5074 → 5074.1 → 5074.1.1
3	2	e8ygd21	2:1-49	LHC	5074 → 5074.1 → 5074.1.1
4	3	e8ygd31	3:1-62	LHC	5074 → 5074.1 → 5074.1.1
5	7	e8ygd71	7:1-62	LHC	5074 → 5074.1 → 5074.1.1
6	8	e8ygd81	8:1-49	LHC	5074 → 5074.1 → 5074.1.1
7	9	e8ygd91	9:1-62	LHC	5074 → 5074.1 → 5074.1.1
8	a	e8ygda1	a:1-62	LHC	5074 → 5074.1 → 5074.1.1
9	A	e8ygdA1	A:1-62	LHC	5074 → 5074.1 → 5074.1.1
10	b	e8ygdb1	b:1-49	LHC	5074 → 5074.1 → 5074.1.1
11	B	e8ygdB1	B:1-49	LHC	5074 → 5074.1 → 5074.1.1
12	C	e8ygdC1	C:1-49	LHC	5074 → 5074.1 → 5074.1.1
13	D	e8ygdD1	D:1-62	LHC	5074 → 5074.1 → 5074.1.1
14	E	e8ygdE1	E:1-49	LHC	5074 → 5074.1 → 5074.1.1
15	F	e8ygdF1	F:1-62	LHC	5074 → 5074.1 → 5074.1.1
16	G	e8ygdG1	G:1-49	LHC	5074 → 5074.1 → 5074.1.1
17	H	e8ygdH01	H:1-35	PRCH	5002 → 5002.1 → 5002.1.1
18	H	e8ygdH02	H:36-253	Photosynthetic reaction centre, H-chain N-terminal region / PRC-barrel domain	4 → 4.6 → 4.6.1
19	I	e8ygdI1	I:1-62	LHC	5074 → 5074.1 → 5074.1.1
20	J	e8ygdJ1	J:1-49	LHC	5074 → 5074.1 → 5074.1.1
21	K	e8ygdK1	K:1-62	LHC	5074 → 5074.1 → 5074.1.1
22	L	e8ygdL01	L:1-282	Photo_RC	5037 → 5037.1 → 5037.1.1
23	M	e8ygdM01	M:1-303	Photo_RC	5037 → 5037.1 → 5037.1.1
24	N	e8ygdN1	N:1-49	LHC	5074 → 5074.1 → 5074.1.1
25	O	e8ygdO1	O:1-62	LHC	5074 → 5074.1 → 5074.1.1
26	P	e8ygdP1	P:1-49	LHC	5074 → 5074.1 → 5074.1.1
27	Q	e8ygdQ1	Q:1-62	LHC	5074 → 5074.1 → 5074.1.1
28	R	e8ygdR1	R:1-49	LHC	5074 → 5074.1 → 5074.1.1
29	S	e8ygdS1	S:1-62	LHC	5074 → 5074.1 → 5074.1.1
30	T	e8ygdT1	T:1-49	LHC	5074 → 5074.1 → 5074.1.1
31	U	e8ygdU1	U:1-62	LHC	5074 → 5074.1 → 5074.1.1
32	V	e8ygdV1	V:1-49	LHC	5074 → 5074.1 → 5074.1.1
33	W	e8ygdW1	W:1-62	LHC	5074 → 5074.1 → 5074.1.1
34	X	e8ygdX01	X:1-73	RhodobacterPufX	6014 → 6014.1 → 6014.1.1
35	Z	e8ygdZ1	Z:1-49	LHC	5074 → 5074.1 → 5074.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors