ECODEvolutionary Classification of Protein Domains

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PDB 8YGL

34 chains35 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 0Antenna pigment protein beta chainview chain

1 domain

e8ygl01(0:1-49)

Chain 1Antenna pigment protein alpha chainview chain

1 domain

e8ygl11(1:1-62)

Chain 2Antenna pigment protein beta chainview chain

1 domain

e8ygl21(2:1-49)

Chain 3Antenna pigment protein alpha chainview chain

1 domain

e8ygl31(3:1-62)

Chain 7Antenna pigment protein alpha chainview chain

1 domain

e8ygl71(7:1-62)

Chain 8Antenna pigment protein beta chainview chain

1 domain

e8ygl81(8:1-49)

Chain 9Antenna pigment protein alpha chainview chain

1 domain

e8ygl91(9:1-62)

Chain aAntenna pigment protein alpha chainview chain

1 domain

e8ygla1(a:1-62)

Chain AAntenna pigment protein alpha chainview chain

1 domain

e8yglA1(A:1-62)

Chain bAntenna pigment protein beta chainview chain

1 domain

e8yglb1(b:1-49)

Chain BAntenna pigment protein beta chainview chain

1 domain

e8yglB1(B:1-49)

Chain CAntenna pigment protein beta chainview chain

1 domain

e8yglC1(C:1-49)

Chain DAntenna pigment protein alpha chainview chain

1 domain

e8yglD1(D:1-62)

Chain EAntenna pigment protein beta chainview chain

1 domain

e8yglE1(E:1-49)

Chain FAntenna pigment protein alpha chainview chain

1 domain

e8yglF1(F:1-62)

Chain GAntenna pigment protein beta chainview chain

1 domain

e8yglG1(G:1-49)

Chain HPhotosynthetic reaction center subunit Hview chain

2 domains

e8yglH1(H:1-35)e8yglH2(H:36-253)

Chain IAntenna pigment protein alpha chainview chain

1 domain

e8yglI1(I:1-62)

Chain JAntenna pigment protein beta chainview chain

1 domain

e8yglJ1(J:1-49)

Chain KAntenna pigment protein alpha chainview chain

1 domain

e8yglK1(K:1-62)

Chain LReaction center protein L chainview chain

1 domain

e8yglL1(L:1-282)

Chain MReaction center protein M chainview chain

1 domain

e8yglM1(M:1-303)

Chain NAntenna pigment protein beta chainview chain

1 domain

e8yglN1(N:1-49)

Chain OAntenna pigment protein alpha chainview chain

1 domain

e8yglO1(O:1-62)

Chain PAntenna pigment protein beta chainview chain

1 domain

e8yglP1(P:1-49)

Chain QAntenna pigment protein alpha chainview chain

1 domain

e8yglQ1(Q:1-62)

Chain RAntenna pigment protein beta chainview chain

1 domain

e8yglR1(R:1-49)

Chain SAntenna pigment protein alpha chainview chain

1 domain

e8yglS1(S:1-62)

Chain TAntenna pigment protein beta chainview chain

1 domain

e8yglT1(T:1-49)

Chain UAntenna pigment protein alpha chainview chain

1 domain

e8yglU1(U:1-62)

Chain VAntenna pigment protein beta chainview chain

1 domain

e8yglV1(V:1-49)

Chain WAntenna pigment protein alpha chainview chain

1 domain

e8yglW1(W:1-62)

Chain X1-deoxy-D-xylulose-5-phosphate synthaseview chain

1 domain

e8yglX1(X:1-73)

Chain ZAntenna pigment protein beta chainview chain

1 domain

e8yglZ1(Z:1-49)

All Domains (35)

#	Chain	Domain ID	Range	Family	Classification
1	0	e8ygl01	0:1-49	LHC	5074 → 5074.1 → 5074.1.1
2	1	e8ygl11	1:1-62	LHC	5074 → 5074.1 → 5074.1.1
3	2	e8ygl21	2:1-49	LHC	5074 → 5074.1 → 5074.1.1
4	3	e8ygl31	3:1-62	LHC	5074 → 5074.1 → 5074.1.1
5	7	e8ygl71	7:1-62	LHC	5074 → 5074.1 → 5074.1.1
6	8	e8ygl81	8:1-49	LHC	5074 → 5074.1 → 5074.1.1
7	9	e8ygl91	9:1-62	LHC	5074 → 5074.1 → 5074.1.1
8	a	e8ygla1	a:1-62	LHC	5074 → 5074.1 → 5074.1.1
9	A	e8yglA1	A:1-62	LHC	5074 → 5074.1 → 5074.1.1
10	b	e8yglb1	b:1-49	LHC	5074 → 5074.1 → 5074.1.1
11	B	e8yglB1	B:1-49	LHC	5074 → 5074.1 → 5074.1.1
12	C	e8yglC1	C:1-49	LHC	5074 → 5074.1 → 5074.1.1
13	D	e8yglD1	D:1-62	LHC	5074 → 5074.1 → 5074.1.1
14	E	e8yglE1	E:1-49	LHC	5074 → 5074.1 → 5074.1.1
15	F	e8yglF1	F:1-62	LHC	5074 → 5074.1 → 5074.1.1
16	G	e8yglG1	G:1-49	LHC	5074 → 5074.1 → 5074.1.1
17	H	e8yglH1	H:1-35	PRCH	5002 → 5002.1 → 5002.1.1
18	H	e8yglH2	H:36-253	Photosynthetic reaction centre, H-chain N-terminal region / PRC-barrel domain	4 → 4.6 → 4.6.1
19	I	e8yglI1	I:1-62	LHC	5074 → 5074.1 → 5074.1.1
20	J	e8yglJ1	J:1-49	LHC	5074 → 5074.1 → 5074.1.1
21	K	e8yglK1	K:1-62	LHC	5074 → 5074.1 → 5074.1.1
22	L	e8yglL1	L:1-282	Photo_RC	5037 → 5037.1 → 5037.1.1
23	M	e8yglM1	M:1-303	Photo_RC	5037 → 5037.1 → 5037.1.1
24	N	e8yglN1	N:1-49	LHC	5074 → 5074.1 → 5074.1.1
25	O	e8yglO1	O:1-62	LHC	5074 → 5074.1 → 5074.1.1
26	P	e8yglP1	P:1-49	LHC	5074 → 5074.1 → 5074.1.1
27	Q	e8yglQ1	Q:1-62	LHC	5074 → 5074.1 → 5074.1.1
28	R	e8yglR1	R:1-49	LHC	5074 → 5074.1 → 5074.1.1
29	S	e8yglS1	S:1-62	LHC	5074 → 5074.1 → 5074.1.1
30	T	e8yglT1	T:1-49	LHC	5074 → 5074.1 → 5074.1.1
31	U	e8yglU1	U:1-62	LHC	5074 → 5074.1 → 5074.1.1
32	V	e8yglV1	V:1-49	LHC	5074 → 5074.1 → 5074.1.1
33	W	e8yglW1	W:1-62	LHC	5074 → 5074.1 → 5074.1.1
34	X	e8yglX1	X:1-73	RhodobacterPufX	6014 → 6014.1 → 6014.1.1
35	Z	e8yglZ1	Z:1-49	LHC	5074 → 5074.1 → 5074.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors