ECODEvolutionary Classification of Protein Domains

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PDB 9B8B

14 chains6 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain BTransmembrane protein gp41view chain

1 domain

e9b8bB1(B:7-35,B:61-153)

Chain ETransmembrane protein gp41view chain

1 domain

e9b8bE1(E:7-35,E:61-153)

Chain FTransmembrane protein gp41view chain

1 domain

e9b8bF1(F:7-35,F:61-153)

Chain IRM20A3 fragment antigen binding heavy chainview chain

1 domain

e9b8bI1(I:1-124)

Chain KRM20A3 fragment antigen binding heavy chainview chain

1 domain

e9b8bK1(K:1-124)

Chain MRM20A3 fragment antigen binding heavy chainview chain

1 domain

e9b8bM1(M:1-124)

All Domains (6)

#	Chain	Domain ID	Range	Family	Classification
1	B	e9b8bB1	B:7-35,B:61-153	GP41	3567 → 3567.1 → 3567.1.1
2	E	e9b8bE1	E:7-35,E:61-153	GP41	3567 → 3567.1 → 3567.1.1
3	F	e9b8bF1	F:7-35,F:61-153	GP41	3567 → 3567.1 → 3567.1.1
4	I	e9b8bI1	I:1-124	V-set	11 → 11.1 → 11.1.1
5	K	e9b8bK1	K:1-124	V-set	11 → 11.1 → 11.1.1
6	M	e9b8bM1	M:1-124	V-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors