ECODEvolutionary Classification of Protein Domains

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PDB 9EH5

42 chains44 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aPhotosystem II protein D1 2view chain

1 domain

e9eh5a1(a:13-224,a:267-344)

Chain APhotosystem II protein D1 2view chain

1 domain

e9eh5A1(A:13-224,A:267-344)

Chain bPhotosystem II CP47 reaction center proteinview chain

2 domains

e9eh5b1(b:329-444)e9eh5b2(b:2-328,b:445-479)

Chain BPhotosystem II CP47 reaction center proteinview chain

2 domains

e9eh5B1(B:329-444)e9eh5B2(B:2-328,B:445-479)

Chain cPhotosystem II CP43 reaction center proteinview chain

1 domain

e9eh5c1(c:11-460)

Chain CPhotosystem II CP43 reaction center proteinview chain

1 domain

e9eh5C1(C:11-460)

Chain dPhotosystem II D2 proteinview chain

1 domain

e9eh5d1(d:1-298)

Chain DPhotosystem II D2 proteinview chain

1 domain

e9eh5D01(D:1-298)

Chain eCytochrome b559 subunit alphaview chain

1 domain

e9eh5e1(e:9-80)

Chain ECytochrome b559 subunit alphaview chain

1 domain

e9eh5E1(E:9-80)

Chain fCytochrome b559 subunit betaview chain

1 domain

e9eh5f1(f:13-44)

Chain FCytochrome b559 subunit betaview chain

1 domain

e9eh5F1(F:13-44)

Chain hPhotosystem II reaction center protein Hview chain

1 domain

e9eh5h1(h:2-64)

Chain HPhotosystem II reaction center protein Hview chain

1 domain

e9eh5H1(H:2-64)

Chain iPhotosystem II reaction center protein Iview chain

1 domain

e9eh5i1(i:2-36)

Chain IPhotosystem II reaction center protein Iview chain

1 domain

e9eh5I1(I:2-36)

Chain jPhotosystem II reaction center protein Jview chain

1 domain

e9eh5j1(j:1-39)

Chain JPhotosystem II reaction center protein Jview chain

1 domain

e9eh5J1(J:1-39)

Chain kPhotosystem II reaction center protein Kview chain

1 domain

e9eh5k1(k:9-43)

Chain KPhotosystem II reaction center protein Kview chain

1 domain

e9eh5K1(K:9-43)

Chain lPhotosystem II reaction center protein Lview chain

1 domain

e9eh5l1(l:9-39)

Chain LPhotosystem II reaction center protein Lview chain

1 domain

e9eh5L1(L:9-39)

Chain mPhotosystem II reaction center protein Mview chain

1 domain

e9eh5m1(m:2-30)

Chain MPhotosystem II reaction center protein Mview chain

1 domain

e9eh5M1(M:2-30)

Chain oPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e9eh5o1(o:31-271)

Chain OPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e9eh5O1(O:31-271)

Chain qSll1638 proteinview chain

1 domain

e9eh5q1(q:29-147)

Chain QSll1638 proteinview chain

1 domain

e9eh5Q1(Q:29-147)

Chain rPhotosystem II protein Yview chain

1 domain

e9eh5r1(r:2-35)

Chain RPhotosystem II protein Yview chain

1 domain

e9eh5R1(R:2-35)

Chain tPhotosystem II reaction center protein Tview chain

1 domain

e9eh5t1(t:2-30)

Chain TPhotosystem II reaction center protein Tview chain

1 domain

e9eh5T1(T:2-30)

Chain uPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e9eh5u1(u:37-131)

Chain UPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e9eh5U1(U:37-131)

Chain vCytochrome c-550view chain

1 domain

e9eh5v1(v:26-160)

Chain VCytochrome c-550view chain

1 domain

e9eh5V1(V:26-160)

Chain xPhotosystem II reaction center X proteinview chain

1 domain

e9eh5x1(x:1-35)

Chain XPhotosystem II reaction center X proteinview chain

1 domain

e9eh5X1(X:1-35)

Chain yPhotosystem II reaction center protein Ycf12view chain

1 domain

e9eh5y1(y:8-39)

Chain YPhotosystem II reaction center protein Ycf12view chain

1 domain

e9eh5Y1(Y:8-39)

Chain zPhotosystem II reaction center protein Zview chain

1 domain

e9eh5z1(z:2-61)

Chain ZPhotosystem II reaction center protein Zview chain

1 domain

e9eh5Z1(Z:2-61)

All Domains (44)

#	Chain	Domain ID	Range	Family	Classification
1	a	e9eh5a1	a:13-224,a:267-344	Photo_RC	5037 → 5037.1 → 5037.1.1
2	A	e9eh5A1	A:13-224,A:267-344	Photo_RC	5037 → 5037.1 → 5037.1.1
3	b	e9eh5b1	b:329-444	PSII	3744 → 3744.1 → 3744.1.1
4	b	e9eh5b2	b:2-328,b:445-479	PSII	5075 → 5075.1 → 5075.1.1
5	B	e9eh5B1	B:329-444	PSII	3744 → 3744.1 → 3744.1.1
6	B	e9eh5B2	B:2-328,B:445-479	PSII	5075 → 5075.1 → 5075.1.1
7	c	e9eh5c1	c:11-460	PSII	5075 → 5075.1 → 5075.1.1
8	C	e9eh5C1	C:11-460	PSII	5075 → 5075.1 → 5075.1.1
9	d	e9eh5d1	d:1-298	Photo_RC	5037 → 5037.1 → 5037.1.1
10	D	e9eh5D01	D:1-298	Photo_RC	5037 → 5037.1 → 5037.1.1
11	e	e9eh5e1	e:9-80	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
12	E	e9eh5E1	E:9-80	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
13	f	e9eh5f1	f:13-44	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
14	F	e9eh5F1	F:13-44	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
15	h	e9eh5h1	h:2-64	PsbH	5032 → 5032.1 → 5032.1.1
16	H	e9eh5H1	H:2-64	PsbH	5032 → 5032.1 → 5032.1.1
17	i	e9eh5i1	i:2-36	PsbI	5035 → 5035.1 → 5035.1.1
18	I	e9eh5I1	I:2-36	PsbI	5035 → 5035.1 → 5035.1.1
19	j	e9eh5j1	j:1-39	PsbJ	5031 → 5031.1 → 5031.1.1
20	J	e9eh5J1	J:1-39	PsbJ	5031 → 5031.1 → 5031.1.1
21	k	e9eh5k1	k:9-43	PsbK	5034 → 5034.1 → 5034.1.1
22	K	e9eh5K1	K:9-43	PsbK	5034 → 5034.1 → 5034.1.1
23	l	e9eh5l1	l:9-39	PsbL	5030 → 5030.1 → 5030.1.1
24	L	e9eh5L1	L:9-39	PsbL	5030 → 5030.1 → 5030.1.1
25	m	e9eh5m1	m:2-30	PsbM	5033 → 5033.1 → 5033.1.1
26	M	e9eh5M1	M:2-30	PsbM	5033 → 5033.1 → 5033.1.1
27	o	e9eh5o1	o:31-271	MSP	5084 → 5084.1 → 5084.1.1
28	O	e9eh5O1	O:31-271	MSP	5084 → 5084.1 → 5084.1.1
29	q	e9eh5q1	q:29-147	PsbQ	601 → 601.18 → 601.18.1
30	Q	e9eh5Q1	Q:29-147	PsbQ	601 → 601.18 → 601.18.1
31	r	e9eh5r1	r:2-35	PsbY	6106 → 6106.1 → 6106.1.1
32	R	e9eh5R1	R:2-35	PsbY	6106 → 6106.1 → 6106.1.1
33	t	e9eh5t1	t:2-30	PsbT	3390 → 3390.1 → 3390.1.1
34	T	e9eh5T1	T:2-30	PsbT	3390 → 3390.1 → 3390.1.1
35	u	e9eh5u1	u:37-131	PsbU	102 → 102.1 → 102.1.1
36	U	e9eh5U1	U:37-131	PsbU	102 → 102.1 → 102.1.1
37	v	e9eh5v1	v:26-160	Cytochrom_C550	107 → 107.1 → 107.1.1
38	V	e9eh5V1	V:26-160	Cytochrom_C550	107 → 107.1 → 107.1.1
39	x	e9eh5x1	x:1-35	PsbX	3493 → 3493.1 → 3493.1.1
40	X	e9eh5X1	X:1-35	PsbX	3493 → 3493.1 → 3493.1.1
41	y	e9eh5y1	y:8-39	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
42	Y	e9eh5Y1	Y:8-39	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
43	z	e9eh5z1	z:2-61	Ycf9	5044 → 5044.1 → 5044.1.1
44	Z	e9eh5Z1	Z:2-61	Ycf9	5044 → 5044.1 → 5044.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors