ECODEvolutionary Classification of Protein Domains

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PDB 9KM0

39 chains39 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 1Antenna pigment protein alpha chainview chain

1 domain

e9km011(1:1-53)

Chain 2Antenna pigment protein beta chainview chain

1 domain

e9km021(2:1-49)

Chain aAntenna pigment protein beta chainview chain

1 domain

e9km0a1(a:1-49)

Chain AAntenna pigment protein alpha chainview chain

1 domain

e9km0A1(A:1-53)

Chain bAntenna pigment protein beta chainview chain

1 domain

e9km0b1(b:1-49)

Chain BAntenna pigment protein alpha chainview chain

1 domain

e9km0B1(B:1-53)

Chain CPhotosynthetic reaction center cytochrome c subunitview chain

1 domain

e9km0C1(C:51-354)

Chain dAntenna pigment protein beta chainview chain

1 domain

e9km0d1(d:1-49)

Chain DAntenna pigment protein alpha chainview chain

1 domain

e9km0D1(D:1-53)

Chain eAntenna pigment protein beta chainview chain

1 domain

e9km0e1(e:1-49)

Chain EAntenna pigment protein alpha chainview chain

1 domain

e9km0E1(E:1-53)

Chain fAntenna pigment protein beta chainview chain

1 domain

e9km0f1(f:1-49)

Chain FAntenna pigment protein alpha chainview chain

1 domain

e9km0F1(F:1-53)

Chain gAntenna pigment protein beta chainview chain

1 domain

e9km0g1(g:1-49)

Chain GAntenna pigment protein alpha chainview chain

1 domain

e9km0G1(G:1-53)

Chain HReaction center protein H chainview chain

2 domains

e9km0H1(H:1-34)e9km0H2(H:35-251)

Chain iAntenna pigment protein beta chainview chain

1 domain

e9km0i1(i:1-49)

Chain IAntenna pigment protein alpha chainview chain

1 domain

e9km0I1(I:1-53)

Chain jAntenna pigment protein beta chainview chain

1 domain

e9km0j1(j:1-49)

Chain JAntenna pigment protein alpha chainview chain

1 domain

e9km0J1(J:1-53)

Chain kAntenna pigment protein beta chainview chain

1 domain

e9km0k1(k:1-49)

Chain KAntenna pigment protein alpha chainview chain

1 domain

e9km0K1(K:1-53)

Chain LReaction center protein L chainview chain

1 domain

e9km0L1(L:1-273)

Chain MReaction center protein M chainview chain

1 domain

e9km0M1(M:1-310)

Chain nAntenna pigment protein beta chainview chain

1 domain

e9km0n1(n:1-49)

Chain NAntenna pigment protein alpha chainview chain

1 domain

e9km0N1(N:1-53)

Chain pAntenna pigment protein beta chainview chain

1 domain

e9km0p1(p:1-49)

Chain PAntenna pigment protein alpha chainview chain

1 domain

e9km0P1(P:1-53)

Chain qAntenna pigment protein beta chainview chain

1 domain

e9km0q1(q:1-49)

Chain QAntenna pigment protein alpha chainview chain

1 domain

e9km0Q1(Q:1-53)

Chain rAntenna pigment protein beta chainview chain

1 domain

e9km0r1(r:1-49)

Chain RAntenna pigment protein alpha chainview chain

1 domain

e9km0R1(R:1-53)

Chain sAntenna pigment protein beta chainview chain

1 domain

e9km0s1(s:1-49)

Chain SAntenna pigment protein alpha chainview chain

1 domain

e9km0S1(S:1-53)

Chain tAntenna pigment protein beta chainview chain

1 domain

e9km0t1(t:1-49)

Chain TAntenna pigment protein alpha chainview chain

1 domain

e9km0T1(T:1-53)

Chain vAntenna pigment protein beta chainview chain

1 domain

e9km0v1(v:1-49)

Chain VAntenna pigment protein alpha chainview chain

1 domain

e9km0V1(V:1-53)

All Domains (39)

#	Chain	Domain ID	Range	Family	Classification
1	1	e9km011	1:1-53	LHC	5074 → 5074.1 → 5074.1.1
2	2	e9km021	2:1-49	LHC	5074 → 5074.1 → 5074.1.1
3	a	e9km0a1	a:1-49	LHC	5074 → 5074.1 → 5074.1.1
4	A	e9km0A1	A:1-53	LHC	5074 → 5074.1 → 5074.1.1
5	b	e9km0b1	b:1-49	LHC	5074 → 5074.1 → 5074.1.1
6	B	e9km0B1	B:1-53	LHC	5074 → 5074.1 → 5074.1.1
7	C	e9km0C1	C:51-354	CytoC_RC	139 → 139.3 → 139.3.1
8	d	e9km0d1	d:1-49	LHC	5074 → 5074.1 → 5074.1.1
9	D	e9km0D1	D:1-53	LHC	5074 → 5074.1 → 5074.1.1
10	e	e9km0e1	e:1-49	LHC	5074 → 5074.1 → 5074.1.1
11	E	e9km0E1	E:1-53	LHC	5074 → 5074.1 → 5074.1.1
12	f	e9km0f1	f:1-49	LHC	5074 → 5074.1 → 5074.1.1
13	F	e9km0F1	F:1-53	LHC	5074 → 5074.1 → 5074.1.1
14	g	e9km0g1	g:1-49	LHC	5074 → 5074.1 → 5074.1.1
15	G	e9km0G1	G:1-53	LHC	5074 → 5074.1 → 5074.1.1
16	H	e9km0H1	H:1-34	PRCH	5002 → 5002.1 → 5002.1.1
17	H	e9km0H2	H:35-251	Photosynthetic reaction centre, H-chain N-terminal region / PRC-barrel domain	4 → 4.6 → 4.6.1
18	i	e9km0i1	i:1-49	LHC	5074 → 5074.1 → 5074.1.1
19	I	e9km0I1	I:1-53	LHC	5074 → 5074.1 → 5074.1.1
20	j	e9km0j1	j:1-49	LHC	5074 → 5074.1 → 5074.1.1
21	J	e9km0J1	J:1-53	LHC	5074 → 5074.1 → 5074.1.1
22	k	e9km0k1	k:1-49	LHC	5074 → 5074.1 → 5074.1.1
23	K	e9km0K1	K:1-53	LHC	5074 → 5074.1 → 5074.1.1
24	L	e9km0L1	L:1-273	Photo_RC	5037 → 5037.1 → 5037.1.1
25	M	e9km0M1	M:1-310	Photo_RC	5037 → 5037.1 → 5037.1.1
26	n	e9km0n1	n:1-49	LHC	5074 → 5074.1 → 5074.1.1
27	N	e9km0N1	N:1-53	LHC	5074 → 5074.1 → 5074.1.1
28	p	e9km0p1	p:1-49	LHC	5074 → 5074.1 → 5074.1.1
29	P	e9km0P1	P:1-53	LHC	5074 → 5074.1 → 5074.1.1
30	q	e9km0q1	q:1-49	LHC	5074 → 5074.1 → 5074.1.1
31	Q	e9km0Q1	Q:1-53	LHC	5074 → 5074.1 → 5074.1.1
32	r	e9km0r1	r:1-49	LHC	5074 → 5074.1 → 5074.1.1
33	R	e9km0R1	R:1-53	LHC	5074 → 5074.1 → 5074.1.1
34	s	e9km0s1	s:1-49	LHC	5074 → 5074.1 → 5074.1.1
35	S	e9km0S1	S:1-53	LHC	5074 → 5074.1 → 5074.1.1
36	t	e9km0t1	t:1-49	LHC	5074 → 5074.1 → 5074.1.1
37	T	e9km0T1	T:1-53	LHC	5074 → 5074.1 → 5074.1.1
38	v	e9km0v1	v:1-49	LHC	5074 → 5074.1 → 5074.1.1
39	V	e9km0V1	V:1-53	LHC	5074 → 5074.1 → 5074.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors