ECODEvolutionary Classification of Protein Domains

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PDB 9L5V

46 chains42 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 1ACPII-1view chain

1 domain

e9l5v11(1:41-200)

Chain 2ACPII-2view chain

1 domain

e9l5v21(2:45-218)

Chain 3ACPII-3view chain

1 domain

e9l5v31(3:40-219)

Chain 4ACPII-4view chain

1 domain

e9l5v41(4:56-215)

Chain 6ACPII-6view chain

1 domain

e9l5v61(6:65-237)

Chain aPhotosystem II protein D1view chain

1 domain

e9l5va1(a:63-336)

Chain APhotosystem II protein D1view chain

1 domain

e9l5vA1(A:63-336)

Chain bPhotosystem II CP47 reaction center proteinview chain

2 domains

e9l5vb1(b:2-328,b:445-479)e9l5vb2(b:329-444)

Chain BPhotosystem II CP47 reaction center proteinview chain

2 domains

e9l5vB1(B:2-328,B:445-479)e9l5vB2(B:329-444)

Chain cPhotosystem II CP43 reaction center proteinview chain

1 domain

e9l5vc1(c:38-486)

Chain CPhotosystem II CP43 reaction center proteinview chain

1 domain

e9l5vC1(C:37-483)

Chain dPhotosystem II D2 proteinview chain

1 domain

e9l5vd1(d:67-351)

Chain DPhotosystem II D2 proteinview chain

1 domain

e9l5vD1(D:67-351)

Chain eCytochrome b559 subunit alphaview chain

1 domain

e9l5ve1(e:20-83)

Chain ECytochrome b559 subunit alphaview chain

1 domain

e9l5vE1(E:20-83)

Chain fCytochrome b559 subunit betaview chain

1 domain

e9l5vf1(f:13-41)

Chain FCytochrome b559 subunit betaview chain

1 domain

e9l5vF1(F:14-42)

Chain hPhotosystem II reaction center protein Hview chain

1 domain

e9l5vh1(h:2-66)

Chain HPhotosystem II reaction center protein Hview chain

1 domain

e9l5vH1(H:2-66)

Chain iPhotosystem II reaction center protein Iview chain

1 domain

e9l5vi1(i:1-35)

Chain IPhotosystem II reaction center protein Iview chain

1 domain

e9l5vI1(I:1-35)

Chain kPhotosystem II reaction center protein Kview chain

1 domain

e9l5vk1(k:9-45)

Chain KPhotosystem II reaction center protein Kview chain

1 domain

e9l5vK1(K:9-45)

Chain lPhotosystem II reaction center protein Lview chain

1 domain

e9l5vl1(l:2-38)

Chain LPhotosystem II reaction center protein Lview chain

1 domain

e9l5vL1(L:2-38)

Chain mPhotosystem II protein Mview chain

1 domain

e9l5vm1(m:2-37)

Chain MPhotosystem II protein Mview chain

1 domain

e9l5vM1(M:2-37)

Chain NACPII-1view chain

1 domain

e9l5vN1(N:41-200)

Chain OACPII-2view chain

1 domain

e9l5vO1(O:45-216)

Chain PACPII-3view chain

1 domain

e9l5vP1(P:40-219)

Chain QACPII-4view chain

1 domain

e9l5vQ1(Q:56-215)

Chain SACPII-6view chain

1 domain

e9l5vS1(S:65-237)

Chain tPhotosystem II reaction center protein Tview chain

1 domain

e9l5vt1(t:1-30)

Chain TPhotosystem II reaction center protein Tview chain

1 domain

e9l5vT1(T:1-30)

Chain xPhotosystem II reaction center X proteinview chain

1 domain

e9l5vx1(x:1-34)

Chain XPhotosystem II reaction center X proteinview chain

1 domain

e9l5vX1(X:1-34)

Chain yPhotosystem II reaction center protein Psb30view chain

1 domain

e9l5vy1(y:7-34)

Chain YPhotosystem II reaction center protein Psb30view chain

1 domain

e9l5vY1(Y:7-34)

Chain zPhotosystem II reaction center protein Zview chain

1 domain

e9l5vz1(z:1-61)

Chain ZPhotosystem II reaction center protein Zview chain

1 domain

e9l5vZ1(Z:1-61)

All Domains (42)

#	Chain	Domain ID	Range	Family	Classification
1	1	e9l5v11	1:41-200	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
2	2	e9l5v21	2:45-218	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
3	3	e9l5v31	3:40-219	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
4	4	e9l5v41	4:56-215	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
5	6	e9l5v61	6:65-237	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
6	a	e9l5va1	a:63-336	Photo_RC	5037 → 5037.1 → 5037.1.1
7	A	e9l5vA1	A:63-336	Photo_RC	5037 → 5037.1 → 5037.1.1
8	b	e9l5vb1	b:2-328,b:445-479	PSII	5075 → 5075.1 → 5075.1.1
9	b	e9l5vb2	b:329-444	PSII	3744 → 3744.1 → 3744.1.1
10	B	e9l5vB1	B:2-328,B:445-479	PSII	5075 → 5075.1 → 5075.1.1
11	B	e9l5vB2	B:329-444	PSII	3744 → 3744.1 → 3744.1.1
12	c	e9l5vc1	c:38-486	PSII	5075 → 5075.1 → 5075.1.1
13	C	e9l5vC1	C:37-483	PSII	5075 → 5075.1 → 5075.1.1
14	d	e9l5vd1	d:67-351	Photo_RC	5037 → 5037.1 → 5037.1.1
15	D	e9l5vD1	D:67-351	Photo_RC	5037 → 5037.1 → 5037.1.1
16	e	e9l5ve1	e:20-83	Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
17	E	e9l5vE1	E:20-83	Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
18	f	e9l5vf1	f:13-41	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
19	F	e9l5vF1	F:14-42	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
20	h	e9l5vh1	h:2-66	PsbH	5032 → 5032.1 → 5032.1.1
21	H	e9l5vH1	H:2-66	PsbH	5032 → 5032.1 → 5032.1.1
22	i	e9l5vi1	i:1-35	PsbI	5035 → 5035.1 → 5035.1.1
23	I	e9l5vI1	I:1-35	PsbI	5035 → 5035.1 → 5035.1.1
24	k	e9l5vk1	k:9-45	PsbK	5034 → 5034.1 → 5034.1.1
25	K	e9l5vK1	K:9-45	PsbK	5034 → 5034.1 → 5034.1.1
26	l	e9l5vl1	l:2-38	PsbL	5030 → 5030.1 → 5030.1.1
27	L	e9l5vL1	L:2-38	PsbL	5030 → 5030.1 → 5030.1.1
28	m	e9l5vm1	m:2-37	PsbM	5033 → 5033.1 → 5033.1.1
29	M	e9l5vM1	M:2-37	PsbM	5033 → 5033.1 → 5033.1.1
30	N	e9l5vN1	N:41-200	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
31	O	e9l5vO1	O:45-216	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
32	P	e9l5vP1	P:40-219	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
33	Q	e9l5vQ1	Q:56-215	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
34	S	e9l5vS1	S:65-237	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
35	t	e9l5vt1	t:1-30	PsbT	3390 → 3390.1 → 3390.1.1
36	T	e9l5vT1	T:1-30	PsbT	3390 → 3390.1 → 3390.1.1
37	x	e9l5vx1	x:1-34	PsbX	3493 → 3493.1 → 3493.1.1
38	X	e9l5vX1	X:1-34	PsbX	3493 → 3493.1 → 3493.1.1
39	y	e9l5vy1	y:7-34	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
40	Y	e9l5vY1	Y:7-34	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
41	z	e9l5vz1	z:1-61	Ycf9	5044 → 5044.1 → 5044.1.1
42	Z	e9l5vZ1	Z:1-61	Ycf9	5044 → 5044.1 → 5044.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors