ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jcoL2 - ECOD Domain | ECOD

ECOD/Domains/e5jcoL2

e5jcoL2

UID: 001827926

PDB

Range: L:1-243
PDB: 5JCO chain L(all domains)
UniProt: Q13509 (all domains)
Gene: TUBB3

Molecule: Tubulin beta-3 chain

3D Structure

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Related Domains

Browse other domains in Tubulin, Misat_Tub_SegII →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupTubulin nucleotide-binding domain-like(2003.1.6)

FFamilyTubulin, Misat_Tub_SegII(2003.1.6.7)

Ligands

in contact, ≤ 4 Å

Phosphomethylphosphonic acid guanylate esterG2P
drugDrugBank DB03532
Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137within 5 Å only

Pfam Families

PF00091Tubulin

Tubulin/FtsZ family, GTPase domain

ClanCL0063NADP_Rossmann

PF10644Misat_Tub_SegII

Misato Segment II tubulin-like domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5JCO RCSB PDB: 5JCO PDBe: 5JCO UniProt: Q13509

Downloads

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Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.