ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5n0mA1 - ECOD Domain | ECOD

ECOD/Domains/e5n0mA1

e5n0mA1

UID: 002077156

PDB

Range: A:272-663
PDB: 5N0M chain A(all domains)
UniProt: Q9UM07 (all domains)
Gene: PADI4

Molecule: Protein-arginine deiminase type-4

3D Structure

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Related Domains

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Classification

AArchitecturea+b duplicates or obligate multimers(a.15)

XX-groupPentein(232)

HH-groupPentein(232.1)

TT-groupPentein(232.1.1)

FFamilyPAD(232.1.1.3)

Ligands

in contact, ≤ 4 Å

~{N}-[(1~{S})-1-(1~{H}-benzimidazol-2-yl)-4-(2-fluoranylethanimidoylamino)butyl]-4-phenyl-benzamide8HT
Calcium ionCA
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

Protein-arginine deiminase (PAD)

ClanCL0197GME

External Links

ECOD PDB View: 5N0M RCSB PDB: 5N0M PDBe: 5N0M UniProt: Q9UM07

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.