ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6awoA1 - ECOD Domain | ECOD

ECOD/Domains/e6awoA1

e6awoA1

UID: 002132333

PDB

Range: A:76-617
PDB: 6AWO chain A(all domains)
UniProt: P31645 (all domains)
Gene: SLC6A4

Molecule: Sodium-dependent serotonin transporter

3D Structure

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Related Domains

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Classification

AArchitecturealpha complex topology(a.10)

XX-groupSodium:neurotransmitter symporter family (SNF)-like(5051)

HH-groupSodium:neurotransmitter symporter family (SNF)-like(5051.1)

TT-groupSodium:neurotransmitter symporter family (SNF)-like(5051.1.1)

FFamilySNF(5051.1.1.1)

Ligands

in contact, ≤ 4 Å

CholesterolCLR
drugDrugBank DB04540
N-AcetylglucosamineNAG
drugDrugBank DB00141
Sertraline

Pfam Families

Sodium:neurotransmitter symporter family

ClanCL0062APC

External Links

ECOD PDB View: 6AWO RCSB PDB: 6AWO PDBe: 6AWO UniProt: P31645

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB01104

Chloride ionCL

Sodium ionNA

metal

Shown in the structure viewer. Drug annotations from DrugDomain.