ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vi9B1 - ECOD Domain | ECOD

ECOD/Domains/e1vi9B1

e1vi9B1

UID: 000100685

PDB

Range: B:1-288
PDB: 1VI9 chain B(all domains)
UniProt: P77150 (all domains)
Gene: pdxY

Molecule: Pyridoxamine kinase

3D Structure

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Related Domains

Browse other domains in Phos_pyr_kin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRibokinase-like(2003.6)

TT-groupRibokinase-like(2003.6.1)

FFamilyPhos_pyr_kin(2003.6.1.5)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF08543Phos_pyr_kin

Phosphomethylpyrimidine kinase

ClanCL0118Ribokinase

External Links

ECOD PDB View: 1VI9 RCSB PDB: 1VI9 PDBe: 1VI9 UniProt: P77150

Downloads

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Drug annotations from DrugDomain.