ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3uagA2 - ECOD Domain | ECOD

ECOD/Domains/e3uagA2

e3uagA2

UID: 000103004

PDB

Range: A:94-297
PDB: 3UAG chain A(all domains)
UniProt: P14900 (all domains)
Gene: murD

Molecule: PROTEIN (UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE)

3D Structure

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Related Domains

Browse other domains in Mur_ligase_M →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyMur_ligase_M(2004.1.1.159)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Uridine-5'-Diphosphate-N-Acetylmuramoyl-L-AlanineUMA
drugDrugBank DB01673

Pfam Families

PF08245Mur_ligase_M

Mur ligase middle domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 3UAG RCSB PDB: 3UAG PDBe: 3UAG UniProt: P14900

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

MANGANESE (II) IONMN

metal

+ 1 additive (HEPES)

HEPESEPE
DrugBank DB16872

Shown in the structure viewer. Drug annotations from DrugDomain.