ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4iefF2 - ECOD Domain | ECOD

ECOD/Domains/e4iefF2

e4iefF2

UID: 001033137

PDB

Range: F:367-579
PDB: 4IEF chain F(all domains)
UniProt: P95493 (all domains)
Gene: rgpB

Molecule: Gingipain R2 Mature Domain

3D Structure

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Related Domains

Browse other domains in Peptidase_C25 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupCaspase-like(7575)

HH-groupCaspase-like(7575.1)

TT-groupCaspase-like(7575.1.1)

FFamilyPeptidase_C25(7575.1.1.2)

Ligands

in contact, ≤ 4 Å

Barium ionBA
metal
Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01364Peptidase_C25

Peptidase family C25

ClanCL0093Peptidase_CD

External Links

ECOD PDB View: 4IEF RCSB PDB: 4IEF PDBe: 4IEF UniProt: P95493

Downloads

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