ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1gpmB2 - ECOD Domain | ECOD

ECOD/Domains/e1gpmB2

e1gpmB2

UID: 000103324

PDB

Range: B:208-343,B:368-404
PDB: 1GPM chain B(all domains)
UniProt: P04079 (all domains)
Gene: guaA

Molecule: GMP SYNTHETASE

3D Structure

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Related Domains

Browse other domains in NAD_synthase, tRNA_Me_trans →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilyNAD_synthase, tRNA_Me_trans(2005.1.1.47)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
PYROPHOSPHATE 2-POP
Magnesium ionMG

Pfam Families

PF02540NAD_synthase

NAD synthase

ClanCL0039HUP

PF03054tRNA_Me_trans

tRNA methyl transferase HUP domain

ClanCL0039HUP

External Links

ECOD PDB View: 1GPM RCSB PDB: 1GPM PDBe: 1GPM UniProt: P04079

Downloads

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metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.