ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3vyoA2 - ECOD Domain | ECOD

ECOD/Domains/e3vyoA2

e3vyoA2

UID: 001063071

PDB

Range: A:240-408
PDB: 3VYO chain A(all domains)
UniProt: I6Y9J2 (all domains)
Gene: ldtB

Molecule: L,D-transpeptidase 2 (LDT 2) (EC 2.3.2.-) (Ldt(Mt2))

3D Structure

Loading viewer...

Related Domains

Browse other domains in YkuD →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupL,D-transpeptidase catalytic domain-like(4091)

HH-groupL,D-transpeptidase catalytic domain-like(4091.1)

TT-groupL,D-transpeptidase catalytic domain-like(4091.1.1)

FFamilyYkuD(4091.1.1.1)

Pfam Families

L,D-transpeptidase catalytic domain

ClanCL0508YkuD

External Links

ECOD PDB View: 3VYO RCSB PDB: 3VYO PDBe: 3VYO UniProt: I6Y9J2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure