ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4avvB1 - ECOD Domain | ECOD

ECOD/Domains/e4avvB1

e4avvB1

UID: 001063281

PDB

Range: B:1-204
PDB: 4AVV chain B(all domains)
UniProt: P02743 (all domains)
Gene: APCS

Molecule: SERUM AMYLOID P-COMPONENT

3D Structure

Loading viewer...

Related Domains

Browse other domains in Pentaxin →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilyPentaxin(10.1.1.5)

Ligands

in contact, ≤ 4 Å

MiridesapGHE
drugDrugBank DB13087
N-acetyl-alpha-neuraminic acidSIA
drugDrugBank DB03721

Pfam Families

PF00354Pentaxin

Pentaxin family

ClanCL0004Concanavalin

External Links

ECOD PDB View: 4AVV RCSB PDB: 4AVV PDBe: 4AVV UniProt: P02743

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

N-AcetylglucosamineNAG

drugDrugBank DB00141within 5 Å only

Cadmium ionCD

metal

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.