ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4da4B2 - ECOD Domain | ECOD

ECOD/Domains/e4da4B2

e4da4B2

UID: 001076668

PDB

Range: B:1137-1600
PDB: 4DA4 chain B(all domains)
UniProt: P13864 (all domains)
Gene: Dnmt1

Molecule: DNA (cytosine-5)-methyltransferase 1

3D Structure

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Related Domains

Browse other domains in DNA_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyDNA_methylase(2003.1.5.1)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752
Zinc ionZN
metal

+ 1 additive (Citric acid)

Citric acidCIT

Pfam Families

PF00145DNA_methylase

C-5 cytosine-specific DNA methylase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4DA4 RCSB PDB: 4DA4 PDBe: 4DA4 UniProt: P13864

Downloads

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DrugBank DB04272

Shown in the structure viewer. Drug annotations from DrugDomain.