ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4b3tL1 - ECOD Domain | ECOD

ECOD/Domains/e4b3tL1

e4b3tL1

UID: 001087958

PDB

Range: L:1-125
PDB: 4B3T chain L(all domains)
UniProt: Q5SHN3 (all domains)
Gene: rpsL

Molecule: 30S RIBOSOMAL PROTEIN S12

3D Structure

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Related Domains

Browse other domains in Ribosom_S12_S23 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilyRibosom_S12_S23(2.1.1.1)

Ligands

in contact, ≤ 4 Å

(2S,3S,4R,5R,6R)-2-(aminomethyl)-5-azanyl-6-[(2R,3S,4R,5S)-5-[(1R,2R,3S,5R,6S)-3,5-bis(azanyl)-2-[(2S,3R,4R,5S,6R)-3-azanyl-5-[(4-chlorophenyl)methoxy]-6-(hydroxymethyl)-4-oxidanyl-oxan-2-yl]oxy-6-oxidanyl-cyclohexyl]oxy-2-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]oxy-oxane-3,4-diol3TS
Magnesium ionMG
metal

Pfam Families

PF00164Ribosom_S12_S23

Ribosomal protein S12/S23

ClanCL0021OB

External Links

ECOD PDB View: 4B3T RCSB PDB: 4B3T PDBe: 4B3T UniProt: Q5SHN3

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.