ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4jzdH1 - ECOD Domain | ECOD

ECOD/Domains/e4jzdH1

e4jzdH1

UID: 001094921

PDB

Range: H:16-257
PDB: 4JZD chain H(all domains)
UniProt: P08709 (all domains)
Gene: F7

Molecule: Factor VIIa (Heavy Chain)

3D Structure

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Related Domains

Browse other domains in Trypsin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyTrypsin(1.1.17.1)

Ligands

in contact, ≤ 4 Å

2-{2-[(4-carbamimidoylphenyl)carbamoyl]-6-methoxypyridin-3-yl}-5-{[(2S)-1-hydroxy-3,3-dimethylbutan-2-yl]carbamoyl}benzoic acid1NJ
Calcium ionCA
metal

+ 2 additives (Glycerin, Sulfate ion)

Glycerin

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 4JZD RCSB PDB: 4JZD PDBe: 4JZD UniProt: P08709

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.