ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4mcbB1 - ECOD Domain | ECOD

ECOD/Domains/e4mcbB1

e4mcbB1

UID: 001096329

PDB

Range: B:1-243
PDB: 4MCB chain B(all domains)
UniProt: P43912 (all domains)
Gene: trmD

Molecule: tRNA (guanine-N(1)-)-methyltransferase

3D Structure

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Related Domains

Browse other domains in tRNA_m1G_MT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilytRNA_m1G_MT(2488.1.1.3)

Ligands

in contact, ≤ 4 Å

N-(4-{[(1H-imidazol-2-ylmethyl)amino]methyl}benzyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide21W

+ 2 additives (Acetate, Sulfate ion)

AcetateACT
DrugBank DB14511
Sulfate ion

Pfam Families

PF01746tRNA_m1G_MT

tRNA (Guanine-1)-methyltransferase TrmD

ClanCL0098SPOUT

External Links

ECOD PDB View: 4MCB RCSB PDB: 4MCB PDBe: 4MCB UniProt: P43912

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.