ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4g0dC2 - ECOD Domain | ECOD

ECOD/Domains/e4g0dC2

e4g0dC2

UID: 001096470

PDB

Range: C:104-276
PDB: 4G0D chain C(all domains)
UniProt: P45452 (all domains)
Gene: MMP13

Molecule: Collagenase 3

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

(S)-propane-1,2-diolPGO
drugDrugBank DB04349
Calcium ionCA
metal
Chloride ion

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 4G0D RCSB PDB: 4G0D PDBe: 4G0D UniProt: P45452

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Zinc ionZN

metal

+ 1 additive (Glycerol)

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.