ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e2mdkA1 - ECOD Domain | ECOD

ECOD/Domains/e2mdkA1

e2mdkA1

UID: 001112338

PDB

Range: A:1-125
PDB: 2MDK chain A(all domains)
UniProt: O95292 (all domains)
Gene: VAPB

Molecule: Vesicle-associated membrane protein-associated protein B/C (VAMP-B/VAMP-C) (VAMP-associated protein B/C) (VAP-B/VAP-C)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Motile_Sperm →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyMotile_Sperm(11.1.1.13)

Pfam Families

PF00635Motile_Sperm

MSP (Major sperm protein) domain

ClanCL0159E-set

External Links

ECOD PDB View: 2MDK RCSB PDB: 2MDK PDBe: 2MDK UniProt: O95292

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure