ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2ymwB2 - ECOD Domain | ECOD

ECOD/Domains/e2ymwB2

e2ymwB2

UID: 001113257

PDB

Range: B:249-686
PDB: 2YMW chain B(all domains)
UniProt: F2JXJ3 (all domains)
Gene: lodA

Molecule: L-LYSINE 6-OXIDASE

3D Structure

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Related Domains

Browse other domains in LodA_C →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupL-Lys epsilon-oxidase C-terminal domain(3752)

HH-groupL-Lys epsilon-oxidase C-terminal domain(3752.1)

TT-groupL-Lys epsilon-oxidase C-terminal domain(3752.1.1)

FFamilyLodA_C(3752.1.1.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 2 additives (Ethanol, Glycerin)

EthanolEOH
DrugBank DB00898
GlycerinGOL

Pfam Families

L-lysine epsilon oxidase C-terminal domain

External Links

ECOD PDB View: 2YMW RCSB PDB: 2YMW PDBe: 2YMW UniProt: F2JXJ3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.