ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4cfcA1 - ECOD Domain | ECOD

ECOD/Domains/e4cfcA1

e4cfcA1

UID: 001122534

PDB

Range: A:57-209
PDB: 4CFC chain A(all domains)
UniProt: Q76353 (all domains)

Molecule: INTEGRASE

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

5-[[[(1S)-2-(butylamino)-2-oxidanylidene-1-phenyl-ethyl]carbamoyl-methyl-amino]methyl]-1,3-benzodioxole-4-carboxylic acid7NV
Chloride ionCL

+ 2 additives (Acetate, Sulfate ion)

AcetateACT

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 4CFC RCSB PDB: 4CFC PDBe: 4CFC UniProt: Q76353

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.