ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2dq0A3 - ECOD Domain | ECOD

ECOD/Domains/e2dq0A3

e2dq0A3

UID: 001128440

PDB

Range: A:116-447
PDB: 2DQ0 chain A(all domains)
UniProt: O58441 (all domains)
Gene: serS

Molecule: Seryl-tRNA synthetase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2b →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2b(314.1.1.2)

Ligands

in contact, ≤ 4 Å

5'-O-(L-Serylsulfamoyl)adenosineSSA
drugDrugBank DB03869

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF00587tRNA-synt_2b

tRNA synthetase class II core domain (G, H, P, S and T)

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 2DQ0 RCSB PDB: 2DQ0 PDBe: 2DQ0 UniProt: O58441

Downloads

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Drug annotations from DrugDomain.