ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1sqfA2 - ECOD Domain | ECOD

ECOD/Domains/e1sqfA2

e1sqfA2

UID: 001131167

PDB

Range: A:232-429
PDB: 1SQF chain A(all domains)
UniProt: P36929 (all domains)
Gene: rsmB

Molecule: Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.176) (16S rRNA m5C967 methyltransferase) (rRNA (cytosine-C(5)-)-methyltransferase RsmB)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Methyltr_RsmB-F →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltr_RsmB-F(2003.1.5.6)

Pfam Families

PF01189Methyltr_RsmB-F

16S rRNA methyltransferase RsmB/F

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 1SQF RCSB PDB: 1SQF PDBe: 1SQF UniProt: P36929

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure