ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1vhkB2 - ECOD Domain | ECOD

ECOD/Domains/e1vhkB2

e1vhkB2

UID: 000113967

PDB

Range: B:74-253
PDB: 1VHK chain B(all domains)
UniProt: P54461 (all domains)
Gene: rsmE

Molecule: Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.193) (16S rRNA m3U1498 methyltransferase)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Methyltrans_RNA →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyMethyltrans_RNA(2488.1.1.12)

Pfam Families

PF04452Methyltrans_RNA

RNA methyltransferase domain

ClanCL0098SPOUT

External Links

ECOD PDB View: 1VHK RCSB PDB: 1VHK PDBe: 1VHK UniProt: P54461

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure