ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3bbeA1 - ECOD Domain | ECOD

ECOD/Domains/e3bbeA1

e3bbeA1

UID: 000113977

PDB

Range: A:2-205
PDB: 3BBE chain A(all domains)
UniProt: Q57977 (all domains)
Gene: nep1

Molecule: Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1) (16S rRNA Psi914 methyltransferase)

3D Structure

Loading viewer...

Related Domains

Browse other domains in EMG1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyEMG1(2488.1.1.7)

Pfam Families

EMG1/NEP1 methyltransferase

ClanCL0098SPOUT

External Links

ECOD PDB View: 3BBE RCSB PDB: 3BBE PDBe: 3BBE UniProt: Q57977

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure