ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4c8gB1 - ECOD Domain | ECOD

ECOD/Domains/e4c8gB1

e4c8gB1

UID: 001142236

PDB

Range: B:1-161
PDB: 4C8G chain B(all domains)
UniProt: B4EC22 (all domains)
Gene: ispF

Molecule: 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE

3D Structure

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Related Domains

Browse other domains in YgbB →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5)

TT-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5.1)

FFamilyYgbB(301.5.1.1)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-MonophosphateC5P
drugDrugBank DB03403
Magnesium ionMG
metal
Zinc ion

Pfam Families

YgbB family

External Links

ECOD PDB View: 4C8G RCSB PDB: 4C8G PDBe: 4C8G UniProt: B4EC22

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.