ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4cjfA1 - ECOD Domain | ECOD

ECOD/Domains/e4cjfA1

e4cjfA1

UID: 001142304

PDB

Range: A:57-209
PDB: 4CJF chain A(all domains)
UniProt: Q76353 (all domains)

Molecule: Gag-Pol polyprotein (Pr160Gag-Pol)

DrugDomain

drugdomain.cs.ucf.edu

Drugs and bound ligands associated with this domain's UniProt entry, cross-referenced from DrugDomain (UCF). This is a protein-level annotation and is distinct from the structural-contact ligands of this specific structure. Each entry links to DrugDomain plus the source database for whichever identifiers it carries.

DrugBank drugs (3)

DB01093DMS

DIMETHYL SULFOXIDE

DrugDomain DrugBank RCSB Compound

DB14511ACT

ACETATE ION

DrugDomain DrugBank RCSB Compound

DB14546SO4

SULFATE ION

DrugDomain DrugBank RCSB Compound

Bound ligands (3)· 1 buffer/additive

CL

CHLORIDE ION

DrugDomain RCSB Compound

RVN

5-[(E)-(2-oxidanylidene-1H-indol-3-ylidene)methyl]-1,3-benzodioxole-4-carboxylic acid

DrugDomain RCSB Compound

EDObuffer

1,2-ETHANEDIOL

DrugDomain RCSB Compound

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 4CJF RCSB PDB: 4CJF PDBe: 4CJF UniProt: Q76353

Downloads

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