ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4cjwB1 - ECOD Domain | ECOD

ECOD/Domains/e4cjwB1

e4cjwB1

UID: 001142324

PDB

Range: B:57-209
PDB: 4CJW chain B(all domains)
UniProt: Q76353 (all domains)

Molecule: INTEGRASE

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

6-[(5-bromo-2,3-dioxo-2,3-dihydro-1H-indol-1-yl)methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acidCBJ

+ 2 additives (Acetate, Sulfate ion)

AcetateACT
DrugBank DB14511
Sulfate ion

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 4CJW RCSB PDB: 4CJW PDBe: 4CJW UniProt: Q76353

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.