ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4cdqC1 - ECOD Domain | ECOD

ECOD/Domains/e4cdqC1

e4cdqC1

UID: 001144571

PDB

Range: C:1-242
PDB: 4CDQ chain C(all domains)
UniProt: B2ZUN0 (all domains)

Molecule: VP3

3D Structure

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Related Domains

Browse other domains in Rhv →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv(10.2.1.1)

Ligands

in contact, ≤ 4 Å

4-((5-(2-oxo-3-(pyridin-4-yl)imidazolidin-1-yl)pentyl)oxy)benzaldehyde O-ethyl oxime7VR
Sodium ionNA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

picornavirus capsid protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 4CDQ RCSB PDB: 4CDQ PDBe: 4CDQ UniProt: B2ZUN0

Downloads

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