ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vsjA1 - ECOD Domain | ECOD

ECOD/Domains/e1vsjA1

e1vsjA1

UID: 000114954

PDB

Range: A:54-198
PDB: 1VSJ chain A(all domains)
UniProt: O92956 (all domains)
Gene: gag-pol

Molecule: INTEGRASE

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Cadmium ionCD
metal

+ 1 additive (HEPES)

HEPESEPE
DrugBank DB16872

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 1VSJ RCSB PDB: 1VSJ PDBe: 1VSJ UniProt: O92956

Downloads

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