ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e2hbmA2 - ECOD Domain | ECOD

ECOD/Domains/e2hbmA2

e2hbmA2

UID: 000115182

PDB

Range: A:129-420
PDB: 2HBM chain A(all domains)
UniProt: Q12149 (all domains)
Gene: RRP6

Molecule: Exosome complex exonuclease RRP6

3D Structure

Loading viewer...

Related Domains

Browse other domains in DNA_pol_A_exo1 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyDNA_pol_A_exo1(2484.1.1.20)

Ligands

in contact, ≤ 4 Å

Uridine monophosphateU5P
drugDrugBank DB03685within 5 Å only
MANGANESE (II) IONMN
metal
Zinc ion

Pfam Families

PF01612DNA_pol_A_exo1

3'-5' exonuclease

ClanCL0219RNase_H

External Links

ECOD PDB View: 2HBM RCSB PDB: 2HBM PDBe: 2HBM UniProt: Q12149

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Shown in the structure viewer. Drug annotations from DrugDomain.