ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2yniB1 - ECOD Domain | ECOD

ECOD/Domains/e2yniB1

e2yniB1

UID: 001168454

PDB

Range: B:231-304
PDB: 2YNI chain B(all domains)
UniProt: P04585 (all domains)
Gene: gag-pol

Molecule: P51 RT

3D Structure

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Related Domains

Browse other domains in RVT_thumb →

Classification

AArchitecturealpha bundles(a.7)

XX-grouphelical bundle domain in reverse transcriptase-like polymerases(4967)

HH-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1)

TT-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1.1)

FFamilyRVT_thumb(4967.1.1.9)

Ligands

in contact, ≤ 4 Å

D-tartaric acidTAR
drugDrugBank DB01694

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF06817RVT_thumb

Reverse transcriptase thumb domain

External Links

ECOD PDB View: 2YNI RCSB PDB: 2YNI PDBe: 2YNI UniProt: P04585

Downloads

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