ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1apvE3 - ECOD Domain | ECOD

ECOD/Domains/e1apvE3

e1apvE3

UID: 001171675

PDB

Range: E:175-323
PDB: 1APV chain E(all domains)
UniProt: P00798 (all domains)

Molecule: PENICILLOPEPSIN

3D Structure

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Related Domains

Browse other domains in Asp →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyAsp(1.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (N,N-dimethylformamide, Sulfate ion)

N,N-dimethylformamideDMF
DrugBank DB01844
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Eukaryotic aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 1APV RCSB PDB: 1APV PDBe: 1APV UniProt: P00798

Downloads

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