ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e2ykpC7 - ECOD Domain | ECOD

ECOD/Domains/e2ykpC7

e2ykpC7

UID: 001173624

PDB

Range: C:154-243
PDB: 2YKP chain C(all domains)
UniProt: Q9UN81 (all domains)
Gene: L1RE1

Molecule: LINE-1 retrotransposable element ORF1 protein (L1ORF1p) (LINE retrotransposable element 1) (LINE1 retrotransposable element 1)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Transposase_22 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyTransposase_22(304.9.1.5)

Pfam Families

PF02994Transposase_22

L1 transposable element RBD-like domain

ClanCL0221RRM

External Links

ECOD PDB View: 2YKP RCSB PDB: 2YKP PDBe: 2YKP UniProt: Q9UN81

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure