ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1rr8C6 - ECOD Domain | ECOD

ECOD/Domains/e1rr8C6

e1rr8C6

UID: 001176179

RepresentativePDB

Range: C:585-636,C:708-765
PDB: 1RR8 chain C(all domains)
UniProt: P11387 (all domains)
Gene: TOP1

Molecule: DNA topoisomerase I

3D Structure

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Related Domains

Browse other domains in Topoisom_I,Topo_C_assoc →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupDNA breaking-rejoining enzymes(101.1.8)

FFamilyTopoisom_I,Topo_C_assoc(101.1.8.3)

Ligands

in contact, ≤ 4 Å

TopotecanTTC
drugDrugBank DB01030within 5 Å only
2-(1-DIMETHYLAMINOMETHYL-2-HYDROXY-8-HYDROXYMETHYL-9-OXO-9,11-DIHYDRO-INDOLIZINO[1,2-B]QUINOLIN-7-YL)-2-HYDROXY-BUTYRIC ACIDTTG

Shown in the structure viewer.

Pfam Families

PF01028Topoisom_I

Eukaryotic DNA topoisomerase I, catalytic core

ClanCL0382DNA-mend

PF14370Topo_C_assoc

C-terminal topoisomerase domain

External Links

ECOD PDB View: 1RR8 RCSB PDB: 1RR8 PDBe: 1RR8 UniProt: P11387

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.