ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2xjaD4 - ECOD Domain | ECOD

ECOD/Domains/e2xjaD4

e2xjaD4

UID: 001184146

PDB

Range: D:142-373
PDB: 2XJA chain D(all domains)
UniProt: P9WJL3 (all domains)
Gene: murE

Molecule: UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE

3D Structure

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Related Domains

Browse other domains in Mur_ligase_M →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyMur_ligase_M(2004.1.1.159)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Uridine-5'-Diphosphate-N-Acetylmuramoyl-L-Alanine-D-GlutamateUAG
drugDrugBank DB02314

Pfam Families

PF08245Mur_ligase_M

Mur ligase middle domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 2XJA RCSB PDB: 2XJA PDBe: 2XJA UniProt: P9WJL3

Downloads

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Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.