ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1eakB5 - ECOD Domain | ECOD

ECOD/Domains/e1eakB5

e1eakB5

UID: 000118427

PDB

Range: B:116-216,B:394-447
PDB: 1EAK chain B(all domains)
UniProt: P08253 (all domains)
Gene: MMP2

Molecule: 72 KDA TYPE IV COLLAGENASE

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 1EAK RCSB PDB: 1EAK PDBe: 1EAK UniProt: P08253

Downloads

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