ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1kbcA1 - ECOD Domain | ECOD

ECOD/Domains/e1kbcA1

e1kbcA1

UID: 000118519

PDB

Range: A:85-242
PDB: 1KBC chain A(all domains)
UniProt: P22894 (all domains)
Gene: MMP8

Molecule: NEUTROPHIL COLLAGENASE

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

3-FORMYL-2-HYDROXY-5-METHYL-HEXANOIC ACID HYDROXYAMIDEHLE
drugDrugBank DB07900
3-AMINO-AZACYCLOTRIDECAN-2-ONERIN
drugDrugBank DB08476within 5 Å only

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 1KBC RCSB PDB: 1KBC PDBe: 1KBC UniProt: P22894

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Calcium ionCA

metal

Zinc ionZN

metal

Shown in the structure viewer. Drug annotations from DrugDomain.