ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2ynfA5 - ECOD Domain | ECOD

ECOD/Domains/e2ynfA5

e2ynfA5

UID: 001186660

PDB

Range: A:317-428
PDB: 2YNF chain A(all domains)
UniProt: P04585 (all domains)
Gene: gag-pol

Molecule: REVERSE TRANSCRIPTASE/RIBONUCLEASE H

3D Structure

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Related Domains

Browse other domains in RVT_connect →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRNaseH-like domain in reverse transcriptase(2484.5)

TT-groupRNaseH-like domain in reverse transcriptase(2484.5.1)

FFamilyRVT_connect(2484.5.1.1)

Ligands

in contact, ≤ 4 Å

2-azanyl-N-[[4-bromanyl-3-(3-chloranyl-5-cyano-phenoxy)-2-fluoranyl-phenyl]methyl]-4-chloranyl-1H-imidazole-5-carboxamideWHU

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF06815RVT_connect

Reverse transcriptase connection domain

External Links

ECOD PDB View: 2YNF RCSB PDB: 2YNF PDBe: 2YNF UniProt: P04585

Downloads

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