ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3e01A8 - ECOD Domain | ECOD

ECOD/Domains/e3e01A8

e3e01A8

UID: 001186787

PDB

Range: A:1-239
PDB: 3E01 chain A(all domains)
UniProt: P04585 (all domains)
Gene: gag-pol

Molecule: Gag-Pol polyprotein

3D Structure

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Related Domains

Browse other domains in RVT_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRVT_1(304.48.1.1)

Ligands

in contact, ≤ 4 Å

3-[2-bromo-4-(1H-pyrazolo[3,4-c]pyridazin-3-ylmethyl)phenoxy]-5-methylbenzonitrilePZ2
drugDrugBank DB08444

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Reverse transcriptase (RNA-dependent DNA polymerase)

ClanCL0027RdRP

External Links

ECOD PDB View: 3E01 RCSB PDB: 3E01 PDBe: 3E01 UniProt: P04585

Downloads

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