ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2yknA12 - ECOD Domain | ECOD

ECOD/Domains/e2yknA12

e2yknA12

UID: 001186823

PDB

Range: A:1-239
PDB: 2YKN chain A(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: REVERSE TRANSCRIPTASE/RIBONUCLEASE H

3D Structure

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Related Domains

Browse other domains in RVT_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRVT_1(304.48.1.1)

Ligands

in contact, ≤ 4 Å

2-[DIFLUORO-[(4-METHYL-PYRIMIDINYL)-THIO]METHYL]-BENZOXAZOLEYKN

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Reverse transcriptase (RNA-dependent DNA polymerase)

ClanCL0027RdRP

External Links

ECOD PDB View: 2YKN RCSB PDB: 2YKN PDBe: 2YKN UniProt: P03366

Downloads

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